PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G397650.1.p
Common NameSb03g018690, SORBIDRAFT_03g018690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 273aa    MW: 30923.6 Da    PI: 6.4364
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G397650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.91.4e-12122209190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle....le 84 
                           kfY+ YA+evGF ++  ++k        +++   C++eg+++  kkk+e + r +++++t+C  k+k+k+ + ++k e++ +     l 
  Sobic.002G397650.1.p 122 KFYSIYAEEVGFGLCYGNNKP-------YSYIIHCNNEGNNTYFKKKEELRVRDNTSKKTHCMSKMKLKRIYdENKEEIAVVIeyvdLM 203
                           6**************998655.......58999**************999********************997666555443333339* PP

                  FAR1  85 HnHela 90 
                           HnH+++
  Sobic.002G397650.1.p 204 HNHPCF 209
                           ***976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-7122209IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSCQKQLFGE ERNCEGVVPE SSASWRAQTT ELAVGQSHDG APAANSEAGT SCRADRSEDV  60
VAGISETKTS SSRCRFSQMA TVTADEIATP DAEKKYTHKE DIDPALIPRP GMSFRNREEA  120
RKFYSIYAEE VGFGLCYGNN KPYSYIIHCN NEGNNTYFKK KEELRVRDNT SKKTHCMSKM  180
KLKRIYDENK EEIAVVIEYV DLMHNHPCFK KKQETINLSE HKEKDPVFLE FVDDLQAADV  240
PHHSIQNIVR DMHGGGEHVP ITKRDLENRQ LM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457885.10.0hypothetical protein SORBIDRAFT_03g018690
TrEMBLC5XLB90.0C5XLB9_SORBI; Putative uncharacterized protein Sb03g018690
STRINGSb03g018690.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Representative plantOGRP3012351